{
  "_id": "6ad863dc69e274306bae8f92",
  "Package": "asht",
  "Type": "Package",
  "Title": "Applied Statistical Hypothesis Tests",
  "Version": "1.0.3",
  "Date": "2025-08-20",
  "Authors@R": "person(given = c(\"Michael\", \"P.\"),\nfamily = \"Fay\",\nrole = c(\"aut\", \"cre\"),\nemail = \"mfay@niaid.nih.gov\")",
  "Description": "Gives some hypothesis test functions (sign test, median\nand other quantile tests, Wilcoxon signed rank test,\ncoefficient of variation test, test of normal variance, test on\nweighted sums of Poisson [see Fay and Kim\n<doi:10.1002/bimj.201600111>], sample size for t-tests with\ndifferent variances and non-equal n per arm, Behrens-Fisher\ntest, nonparametric ABC intervals, Wilcoxon-Mann-Whitney test\n[with effect estimates and confidence intervals, see Fay and\nMalinovsky <doi:10.1002/sim.7890>], two-sample melding tests\n[see Fay, Proschan, and Brittain <doi:10.1111/biom.12231>],\none-way ANOVA allowing var.equal=FALSE [see Brown and Forsythe,\n1974, Biometrics]), prevalence confidence intervals that adjust\nfor sensitivity and specificity [see Lang and Reiczigel, 2014\n<doi:10.1016/j.prevetmed.2013.09.015>] or Bayer, Fay, and\nGraubard, 2023 <doi:10.48550/arXiv.2205.13494>). The focus is\non hypothesis tests that have compatible confidence intervals,\nbut some functions only have confidence intervals (e.g.,\nprevSeSp).",
  "License": "GPL-3",
  "NeedsCompilation": "no",
  "RoxygenNote": "7.2.3",
  "Packaged": {
    "Date": "2026-10-21 06:38:22 UTC",
    "User": "root"
  },
  "Author": "Michael P. Fay [aut, cre]",
  "Maintainer": "Michael P. Fay <mfay@niaid.nih.gov>",
  "Config/pak/sysreqs": "cmake make libuv1-dev",
  "Repository": "https://michaelfay-niaid.r-universe.dev",
  "Date/Publication": "2025-08-20 22:34:57 UTC",
  "RemoteUrl": "https://github.com/cran/asht",
  "RemoteRef": "HEAD",
  "RemoteSha": "72b2dc8d33d4d0359684b8434b0677d4a7b5dd25",
  "_user": "michaelfay-niaid",
  "_type": "src",
  "_file": "asht_1.0.3.tar.gz",
  "_fileid": "https://r2.ropensci.org/1d4aff5ff772ba975ec19bd075b3446c755f732f3c51ac78ec07c4498edde3a0",
  "_filesize": 324420,
  "_sha256": "1d4aff5ff772ba975ec19bd075b3446c755f732f3c51ac78ec07c4498edde3a0",
  "_expires": "2027-01-29T07:03:54.000Z",
  "_created": "2026-10-21T06:38:22.000Z",
  "_published": "2026-10-21T07:03:56.087Z",
  "_buildurl": "https://github.com/r-universe/michaelfay-niaid/actions/runs/39556041481",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 119078020144,
      "time": 151,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12325089117"
    },
    {
      "job": 119078020068,
      "time": 125,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12326236157"
    },
    {
      "job": 119078020103,
      "time": 120,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12327221634"
    },
    {
      "job": 119078020047,
      "time": 121,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12326124921"
    },
    {
      "job": 119076012042,
      "time": 356,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12325617731"
    },
    {
      "job": 119078020088,
      "time": 99,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12325972301"
    },
    {
      "job": 119078020016,
      "time": 116,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12325559850"
    },
    {
      "job": 119078020011,
      "time": 95,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12326017170"
    },
    {
      "job": 119078020171,
      "time": 99,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12326340390"
    }
  ],
  "_upstream": "https://github.com/cran/asht",
  "_commit": {
    "id": "72b2dc8d33d4d0359684b8434b0677d4a7b5dd25",
    "author": "Michael P. Fay <mfay@niaid.nih.gov>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.3\n",
    "time": 1755729297
  },
  "_maintainer": {
    "name": "Michael P. Fay",
    "email": "mfay@niaid.nih.gov",
    "login": "michaelfay-niaid",
    "description": "I am a biostatistician and maintain several R packages,",
    "uuid": 212777592
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "stats",
      "role": "Depends"
    },
    {
      "package": "exact2x2",
      "version": ">= 1.6.4",
      "role": "Depends"
    },
    {
      "package": "exactci",
      "role": "Depends"
    },
    {
      "package": "bpcp",
      "role": "Depends"
    },
    {
      "package": "coin",
      "role": "Depends"
    },
    {
      "package": "perm",
      "role": "Imports"
    },
    {
      "package": "ssanv",
      "role": "Imports"
    },
    {
      "package": "bootstrap",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "michaelfay-niaid",
      "count": 14,
      "uuid": 212777592
    }
  ],
  "_userbio": {
    "uuid": 212777592,
    "type": "user",
    "name": "Michael P Fay",
    "followers": 0,
    "description": "I am a biostatistician and maintain several R packages,"
  },
  "_downloads": {
    "count": 1066,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/asht"
  },
  "_mentions": 3,
  "_searchresults": 61,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/asht.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt"
  ],
  "_realowner": "michaelfay-niaid",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.5",
      "date": "2015-07-11"
    },
    {
      "version": "0.6",
      "date": "2016-05-11"
    },
    {
      "version": "0.8",
      "date": "2017-02-07"
    },
    {
      "version": "0.9",
      "date": "2017-04-03"
    },
    {
      "version": "0.9.1",
      "date": "2017-05-02"
    },
    {
      "version": "0.9.3",
      "date": "2017-10-14"
    },
    {
      "version": "0.9.4",
      "date": "2018-09-14"
    },
    {
      "version": "0.9.5",
      "date": "2020-06-20"
    },
    {
      "version": "0.9.6",
      "date": "2020-07-03"
    },
    {
      "version": "0.9.7",
      "date": "2022-01-25"
    },
    {
      "version": "0.9.8",
      "date": "2022-09-16"
    },
    {
      "version": "1.0.0",
      "date": "2023-02-08"
    },
    {
      "version": "1.0.1",
      "date": "2023-08-24"
    },
    {
      "version": "1.0.3",
      "date": "2025-08-20"
    }
  ],
  "_exports": [
    "abcnonHtest",
    "anovaOneWay",
    "bfControl",
    "bfTest",
    "cvTest",
    "latentTransform",
    "medianTest",
    "meldCD",
    "meldtTest",
    "metaNorm",
    "methodRuleWMW",
    "pbf",
    "prevSeSp",
    "qbf",
    "quantileTest",
    "signTest",
    "simulateSS",
    "tukeyWelsch",
    "var1Test",
    "Vpo",
    "wmwControl",
    "wmwTest",
    "WprevSeSp",
    "wspoissonTest",
    "wsrTest"
  ],
  "_datasets": [
    {
      "name": "ama1c1cpg",
      "title": "Three arm phase 1 malaria vaccine trial",
      "object": "ama1c1cpg",
      "file": "ama1c1cpg.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "vacc",
        "resp"
      ],
      "rows": 58,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "asht-package",
      "title": "Applied Statistical Hypothesis Tests",
      "topics": [
        "asht-package",
        "asht"
      ]
    },
    {
      "page": "abcnonHtest",
      "title": "Nonparametric ABC (Approximate Bootstrap Confidence) intervals.",
      "topics": [
        "abcnonHtest"
      ]
    },
    {
      "page": "ama1c1cpg",
      "title": "Three arm phase 1 malaria vaccine trial",
      "topics": [
        "ama1c1cpg"
      ]
    },
    {
      "page": "anovaOneWay",
      "title": "One-Way ANOVA",
      "topics": [
        "anovaOneWay"
      ]
    },
    {
      "page": "bfTest",
      "title": "Behrens-Fisher Test",
      "topics": [
        "bfTest",
        "bfTest.default",
        "bfTest.formula"
      ]
    },
    {
      "page": "cvTest",
      "title": "Coefficient of Variation Test",
      "topics": [
        "cvTest"
      ]
    },
    {
      "page": "meldCD",
      "title": "Meld Two Confidence Distributions",
      "topics": [
        "meldCD"
      ]
    },
    {
      "page": "meldtTest",
      "title": "Meld t Test",
      "topics": [
        "meldtTest"
      ]
    },
    {
      "page": "metaNorm",
      "title": "Meta analysis of normally distributed parameters with assumed known variance",
      "topics": [
        "metaNorm"
      ]
    },
    {
      "page": "prevSeSp",
      "title": "Estimate prevalence with confidence interval accounting for sensitivity and specificity",
      "topics": [
        "prevSeSp"
      ]
    },
    {
      "page": "quantileTest",
      "title": "Tests and Confidence Intervals about a Quantile.",
      "topics": [
        "medianTest",
        "quantileTest",
        "quantileTest.default",
        "quantileTest.ordered"
      ]
    },
    {
      "page": "signTest",
      "title": "Exact Sign Test with Confidence Intervals",
      "topics": [
        "signTest"
      ]
    },
    {
      "page": "simulateSS",
      "title": "Simulate sample sizes",
      "topics": [
        "simulateSS"
      ]
    },
    {
      "page": "tukeyWelsch",
      "title": "Tukey-Welsch Pairwise Tests",
      "topics": [
        "tukeyWelsch"
      ]
    },
    {
      "page": "var1Test",
      "title": "One Sample Test of Normal Variance",
      "topics": [
        "var1Test"
      ]
    },
    {
      "page": "wmwTest",
      "title": "Wilcoxon-Mann-Whitney test with Confidence Interval on Mann-Whitney Parameter",
      "topics": [
        "wmwTest",
        "wmwTest.default",
        "wmwTest.formula",
        "wmwTest.matrix"
      ]
    },
    {
      "page": "WprevSeSp",
      "title": "Weighted prevalence inferences adjusted for sensitivity and specificity",
      "topics": [
        "WprevSeSp"
      ]
    },
    {
      "page": "wspoissonTest",
      "title": "Test and Confidence Intervals on Weighted Sum of Poissons",
      "topics": [
        "wspoissonTest"
      ]
    },
    {
      "page": "wsrTest",
      "title": "Exact Wilcoxon Signed Rank Test",
      "topics": [
        "wsrTest"
      ]
    }
  ],
  "_rundeps": [
    "bpcp",
    "brio",
    "callr",
    "cli",
    "codetools",
    "coin",
    "cpp11",
    "crayon",
    "desc",
    "diffobj",
    "evaluate",
    "exact2x2",
    "exactci",
    "farver",
    "fs",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "jsonlite",
    "labeling",
    "lattice",
    "libcoin",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "matrixStats",
    "modeltools",
    "multcomp",
    "mvtnorm",
    "otel",
    "perm",
    "pkgbuild",
    "pkgload",
    "praise",
    "processx",
    "ps",
    "R6",
    "RColorBrewer",
    "rlang",
    "rprojroot",
    "S7",
    "sandwich",
    "scales",
    "ssanv",
    "survival",
    "testthat",
    "TH.data",
    "vctrs",
    "viridisLite",
    "waldo",
    "withr",
    "zoo"
  ],
  "_score": 2.7673295491406456,
  "_indexed": true,
  "_nocasepkg": "asht",
  "_universes": [
    "michaelfay-niaid"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-10-21T06:40:24.000Z",
      "distro": "resolute",
      "commit": "72b2dc8d33d4d0359684b8434b0677d4a7b5dd25",
      "fileid": "https://r2.ropensci.org/d388c98ac316dc22a01d205d917d6c2faeac26dc13330d801917112e4acd87ec",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/michaelfay-niaid/actions/runs/39556041481"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.3",
      "date": "2026-10-21T06:40:17.000Z",
      "distro": "resolute",
      "commit": "72b2dc8d33d4d0359684b8434b0677d4a7b5dd25",
      "fileid": "https://r2.ropensci.org/f1886acfa1dcdc7ffcfce336aa174c85c8ee158d8d8614611f33d8cca103f1f8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/michaelfay-niaid/actions/runs/39556041481"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-10-21T07:03:06.000Z",
      "commit": "72b2dc8d33d4d0359684b8434b0677d4a7b5dd25",
      "fileid": "https://r2.ropensci.org/f6406273897392fe8ed8ee390d5fe1cd3dba4125b2e33371a48dfcdb94facaf9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/michaelfay-niaid/actions/runs/39556041481"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.3",
      "date": "2026-10-21T06:59:17.000Z",
      "commit": "72b2dc8d33d4d0359684b8434b0677d4a7b5dd25",
      "fileid": "https://r2.ropensci.org/e187880cec3fab466a5f483db0e7e8f43fdc3bc15d6b67ac52f4b7b0f8d031e3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/michaelfay-niaid/actions/runs/39556041481"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.3",
      "date": "2026-10-21T06:40:21.000Z",
      "commit": "72b2dc8d33d4d0359684b8434b0677d4a7b5dd25",
      "fileid": "https://r2.ropensci.org/26fdef4bc9bf9810be96cb853dd4602ceb24814aa02b7546d7ad153f1c666abe",
      "status": "success",
      "buildurl": "https://github.com/r-universe/michaelfay-niaid/actions/runs/39556041481"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-10-21T06:39:42.000Z",
      "commit": "72b2dc8d33d4d0359684b8434b0677d4a7b5dd25",
      "fileid": "https://r2.ropensci.org/ae191e1e8f9f7a6d5369566eed47786311e9302c2c89e710fb63c7aa955271c2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/michaelfay-niaid/actions/runs/39556041481"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-10-21T06:39:28.000Z",
      "commit": "72b2dc8d33d4d0359684b8434b0677d4a7b5dd25",
      "fileid": "https://r2.ropensci.org/434ae95c1f767fa67514e42402880e26671e8cb6bd702a90b78c665b61b537a0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/michaelfay-niaid/actions/runs/39556041481"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.3",
      "date": "2026-10-21T06:39:28.000Z",
      "commit": "72b2dc8d33d4d0359684b8434b0677d4a7b5dd25",
      "fileid": "https://r2.ropensci.org/e285da24c429d26bb2884865252658de647771d2f9aec767077a00d603d2b1ae",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/michaelfay-niaid/actions/runs/39556041481"
    }
  ]
}